Hi Krisztina,
in PyMOL version 1.2 you cannot install this script as a "Plugin" (in
version 1.5 you can!). Instead, use the "run" command to load it.
PyMOL> run path/to/plot_noe.py
PyMOL> plot_noe path/to/restraints.file
See also:
http://pymolwiki.org/index.php/Run
Cheers,
Thomas
On 28.10.
Hi Thomas,
thanks a lot for your reply! Now I was running the
script from command line and executed it: it did not display anything on
the structure. I inserted a couple of print statements into the script
(attached), but it seems that the "noe_regex" is not being found in the
variable "line"
Hi Krisztina,
I slightly modified the script, see attachment. The regular expression
is modified and I replaced "search" by "match".
The script could be further optimized (exception handling etc.) but with
your example file it works fine now.
Cheers,
Thomas
On 10/29/2012 04:06 PM, Kriszt
Dear Krisztina,
alternatively you could use Xwalk for visualizing distance constraints on PDB
structures. Please have a look at the webserver (www.xwalk.org) or download the
software if you find it useful (http://www.xwalk.org/cgi-bin/download.cgi).
With Xwalk you can calculate surface distance
Hi all,
Do any know how to generate a color bar for red_white_blue? Thank you very
much!
yamei
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Hi Yamei,
you can create a dummy color ramp:
PyMOL> ramp_new colorbar, none, [-5, 0, 5], [red, white, blue]
There is also the spectrumbar script:
http://pymolwiki.org/index.php/Spectrumbar
Cheers,
Thomas
Yamei Yu wrote, On 10/29/12 16:46:
> Hi all,
>
> Do any know how to generate a color ba
