Re: [PyMOL] setting the cutoff radius that determines when atoms are bonded

2012-12-06 Thread Thomas Holder
Hi Rye, only "discrete" objects have per state bonding information. Try this: load multistate.pdb, discrete=1 Hope that helps. Cheers, Thomas Rye Terrell wrote, On 12/05/12 18:20: > I'm loading a movie file now and it appears that the bonds determined in > the first frame are used throughout

Re: [PyMOL] setting the cutoff radius that determines when atoms are bonded

2012-12-06 Thread Rye Terrell
Thanks Thomas. That may or may not have worked, I can't tell. Usually after I load the movie, I can "hide all" followed by "show sticks", and this will show me sticks for all frames of the movie. When I do this now, I get sticks for the first frame, but nothing shows up on later frames. Even if I

[PyMOL] Project Upgrades

2012-12-06 Thread Jason Vertrees
Greetings, This is just a quick note to let you know that the server hosting the PyMOLWiki has recently been upgraded. In general the site should be faster. If you see any problems, please let me know. If anyone is curious, the PyMOLWiki is still highly utilized. It's been viewed over 9.6 million