I am using pymol 1.3 and having trouble with doing manual superposition with my
structures. I am able to download my structures, select the portion I want to
move manually and, after deprotecting it using the action menu move it using
the shift-mouse editing command. When I do this with my selec
Hi Osvaldo,
you are right, I can reproduce this. We'll look into it and let you know when
it has been fixed.
Cheers,
Thomas
On 02 Apr 2014, at 20:30, Osvaldo Martin wrote:
> Hi,
>
> I need to run an script based on PyMOL for a thousands of proteins. The
> problem is that even when I delet
Hi Matt,
plugins are not loaded automatically in headless mode. You have to import your
plugin first if you want to use it from a script. Something like:
import pmg_tk.startup.yourplugin
The plugin manager tells you the python module name of your plugin when you
click on "Info".
Cheers,
Tho
Thanks Thomas!
As a workaround I will divide my data in smaller chunks.
Cheers,
Osvaldo.
On Fri, Apr 4, 2014 at 4:54 PM, Thomas Holder wrote:
> Hi Osvaldo,
>
> you are right, I can reproduce this. We'll look into it and let you know
> when it has been fixed.
>
> Cheers,
> Thomas
>
> On 02
Hi Tom,
PyMOL provides a low-level scripting API to load geometry as "compiled graphics
objects" (CGO). To learn how to draw a rectangular plane, have a look at
examples/devel/cgo_plane.py in the PyMOL installation (or source) directory.
Hope that helps.
Cheers,
Thomas
On 31 Mar 2014, at 03
Hi Suzanne,
looks like you only deprotected the CA atoms. If you have this as a named
selection, try "A > modify > complete > molecules" and deprotect again. Or type:
PyMOL> deprotect bymol (sele)
Instead of working with one object and protecting/deprotecting of subsets of
atoms, I suggest to
Hi Bertha,
can you rephrase your question? I'm not sure if anyone understood what you try
to achieve. Also, I'm not sure if this will be a PyMOL task at all.
Cheers,
Thomas
On 03 Apr 2014, at 14:07, Martin, Bertha wrote:
> Good afternoon,
>
> I am designing an antibody and in doing so, I
