[PyMOL] Detecting Plugins menu

2014-04-14 Thread Spencer Bliven
I'm working on a plugin with a command line interface and a light-weight tk interface through the plugins menu. This works fine on Linux, Windows, and open-source Mac builds, but not on MacPyMol.app. Importing Tkinter causes PyMol to quit with a prompt to install X11 (but not an ImportError, as

Re: [PyMOL] Obtaining accurate FASTA sequence from PDBs

2014-04-14 Thread Thomas Holder
Hi Kelvin, that fasta command right now only dumps the sequence to the log window, it doesn't return or save the sequence to a file. This is probably because for my use case it was always sufficient to copy and paste the sequence from the log window. However, it's not too difficult to improve

Re: [PyMOL] pymol does not free-up the RAM when objects are deleted

2014-04-14 Thread Martin Hediger
It's been a problem for a while, check the thread [PyMOL] Memory not released after load and delete of structure froom 2012. Martin On 04.04.14 21:54, Thomas Holder wrote: Hi Osvaldo, you are right, I can reproduce this. We'll look into it and let you know when it has been fixed.