Re: [PyMOL] Get the color code of each residue when using spectrum?

2014-10-18 Thread Tsjerk Wassenaar
Ni hao Chen Zhao,

This works for me:

col=[]
iterate n. ca, col.append((chain,resi,name,cmd.get_color_tuple(color)))
print col

Cheers,

Tsjerk


On Sat, Oct 18, 2014 at 4:57 AM, Chen Zhao chenzhaoh...@gmail.com wrote:

 Dear all,

 Is it possible to get the color code of each residue if I color the whole
 molecule by B-factor using spectrum? I would like to make a figure with the
 same colors on the primary sequence.

 Thank you so much in advance.

 Best,
 Chen


 --
 Comprehensive Server Monitoring with Site24x7.
 Monitor 10 servers for $9/Month.
 Get alerted through email, SMS, voice calls or mobile push notifications.
 Take corrective actions from your mobile device.
 http://p.sf.net/sfu/Zoho
 ___
 PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
 Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
 Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net




-- 
Tsjerk A. Wassenaar, Ph.D.
--
Comprehensive Server Monitoring with Site24x7.
Monitor 10 servers for $9/Month.
Get alerted through email, SMS, voice calls or mobile push notifications.
Take corrective actions from your mobile device.
http://p.sf.net/sfu/Zoho___
PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net

[PyMOL] OS X 10.10 Yosemite

2014-10-18 Thread Thomas Holder
Dear Mac Users,

if you are thinking about upgrading your Mac to OSX 10.10 Yosemite, please do 
yourself a favour and wait. We are getting a lot of trouble reports from users 
who have upgraded and now have problems with their PyMOL installation. In 
particular, the X11 Hybrid version does not work, neither does the free 
students version. We are working on it. Also feel free to drop me a line if you 
have already upgraded and PyMOL works fine for you or you found a workaround 
for any kind of issue.

Thanks,
  Thomas

-- 
Thomas Holder
PyMOL Developer
Schrödinger, Inc.


--
Comprehensive Server Monitoring with Site24x7.
Monitor 10 servers for $9/Month.
Get alerted through email, SMS, voice calls or mobile push notifications.
Take corrective actions from your mobile device.
http://p.sf.net/sfu/Zoho
___
PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net)
Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users
Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net