[PyMOL] any hotkey?

Hello: I am just wondering is there any hotkey in Pymol so that we can center in the Ligand automatically? For instance: If I press keyboard "L", Pymol zoom to ligand binding pocket automatically Thanks a lot Albert

[PyMOL] How to highlight the interactions between two proteins consituting the complex?

Dear pymol users, I wish to highlight the interactions between two proteins consituting the  complex. I want to make these interacting residues clear but other residues obscure as the background in Pymol. Which would be the skill? Thanks a lotYeping Sun Institute of Microbiology, Chinese Academy

Re: [PyMOL] any hotkey?

Hi Albert, You can use Set_Key , to bind any function (predefined or defined by you) to any “hotkey/shorcut” Cheers, Osvaldo. On Thu, Sep 3, 2015 at 5:57 AM, Albert wrote: Hello: > > I am just wondering is there any hotkey in

Re: [PyMOL] XYZ format - max size of the name field

Hi Pawel, The 4 character limit is currently a hard limit. As a workaround I suggest you reformat your file into PDB format and split the atom name into the name and segi columns for example. Your selection expression will become: For H1: name H1 and segi "" For H1000: name H100 and segi "0"

Re: [PyMOL] any hotkey?

Hi Albert & Osvaldo, This should work in PyMOL 1.7+ to bind the F1 key to zoom on the first "organic" residue: set_key F1, zoom byres first organic, animate=1 Cheers, Thomas On 03 Sep 2015, at 06:48, Osvaldo Martin wrote: > Hi Albert, > > You can use Set_Key, to

[PyMOL] Unable to import fragment

The problem is solved changing the path of chempy from this file : /usr/lib/python2.7/dist-packages/chempy/fragments/__init__.py In that file I change the line: path = chempy.path + 'fragments/' for this line: path = '/usr/share/pymol/data/chempy/fragments/' And that works, cheers.