[PyMOL] Contact map visualizer

2016-05-11 Thread James Starlight
Dear Pymol users! I am in charge with the analysis of protein-protein association during long molecular dynamic simulation. In particularly I am interesting to find residues on one of the protein which are crustal for the binding interface established during Md. For that purpose I am trying to use

[PyMOL] Slow ray trace

2016-05-11 Thread Nicholas Michelarakis
Hello, Apologies for the somewhat naive and general question but I have tried anything I could think of and I'm running out of options. I was using pymol to ray some high quality images. The scene was quite complex. The settings used were: antialias 2 ray_trace_mode 1 stick_quality, 50 fancy_hel

Re: [PyMOL] Contact map visualizer

2016-05-11 Thread Tsjerk Wassenaar
Hi James, You can convert the .xpm file to .png/.jpg using tools like convert (imagemagick) and Gimp. Convert doesn't always get the Gromacs .xpm right, but it's an easy one to try. Cheers, Tsjerk On May 11, 2016 2:40 PM, "James Starlight" wrote: > Dear Pymol users! > > I am in charge with the