[PyMOL] get area as a sequence area pair

2017-03-03 Thread Ahmad Abdelzaher
I have used the script in example 4 here https://pymolwiki.org/index.php/Get_Area to get the areas for a certain pdb. I want to be able to distinguish though which residue has which area. I can get the sequence using get_fastastr, but I want to modify the above script to iterate over the sequence

[PyMOL] Accessing Vina Result Remarks in Uploaded Pdb File

2017-03-03 Thread Rene Francolini
Hi All, I have been working on a python code that i am running in pymol. This code takes in two files, one of which is a multi-model ligand pdb file that has already been run through autodock vina. Therefore, each model within the pdb file has a remark saying: "REMARK VINA RESULT:" followed by the