Re: [PyMOL] Combine two states into one state?

Hi Nicholas, You can use the "split_states" command. https://pymolwiki.org/index.php/Split_states Cheers, Thomas On Wed, Mar 16, 2022 at 6:57 AM Nicholas Gao wrote: > > Dear PyMOL users, > > I have an antibody-antigen structure where the authors have put the antigen > atoms in state 1 and

[PyMOL] RMSD from DCD

I have been using VMD for most of my MD analysis, but I am trying to learn PyMol now. I know how to load a pdb and a dcd onto that pdb. But how do I measure the RMSD of each frame in the DCD aligned to the starting structure, and then output a graph like of RMSD vs frame? Doing this through