RE: [PyMOL] pymol and povray

2002-10-23 Thread Schubert, Carsten
Don't know about MACs but this works on PCs and SGIs: - Exporting Povray scripts from PyMol The choice of the renderer is defined by the variable "ray_default_renderer". A value of 0 points to the internal renderer, a value of 1 creates a povray fi

[PyMOL] pymol and povray

2002-10-23 Thread Craig Smith
I have a apple G4 powerbook using OS10.2. Is it possible to write out a pov-ray type script file that could be directly input into pov-ray? Craig L. Smith, Ph. D. Molecular Microbiology Washington University School of Medicine 660 South Euclid Box 8230 Voice: (314) 362-9054 Fax: (314) 362-1232

RE: [PyMOL] Calpha-Calpha distance

2002-10-23 Thread DeLano, Warren
PyMOL is currently just a little too smart in this area -- it checks to see whether the CA atoms are connected through C and N atoms. The next version will support CA traces with just CA positions. In the meantime, you might want to look into the CGO capability, which lets you draw arbitrary

[PyMOL] Calpha-Calpha distance

2002-10-23 Thread Daniel John Rigden
Hi all I have a PDB file which uses a series of pseudo-Calpha positions to draw an arrow. The positions are 3.0A apart. This is OK for them to be joined in a Calpha trace made in, for example, O and RASMOL, but PYMOL must have a more stringent cutoff. I've had a look but I can't see how to chan

Re: [PyMOL] Need help with selections

2002-10-23 Thread Daniel Kuhn
Hi Aaron, > I am somewhat new to PYMOL and was trying to create a selection of atoms. > What I need to do is select all atoms of a protein that are within 5 > angstroms of an inhibitor (the protein and inhibitor are separate > molecules). I cannot figure out how to do this from the examples in t

RE: [PyMOL] distance parameters

2002-10-23 Thread DeLano, Warren
> From: Jules Jacobsen [mailto:jo...@hermes.cam.ac.uk] > > > you can change most of the parameters using set dash_n where > n= length, > width, gap, radius. Unfortunately dash_color doesn't exist. > ...but you can change the color of a distance object color red,dist01 Warren

Re: [PyMOL] distance parameters

2002-10-23 Thread Jules Jacobsen
you can change most of the parameters using set dash_n where n= length, width, gap, radius. Unfortunately dash_color doesn't exist. hope this helps Jules On Tue, 22 Oct 2002, franck coste wrote: > Hi, > I'd like to know if it's possible to change the parameters of the > DISTANCE command (color,