Re: [PyMOL] coloring surfaces

2003-04-01 Thread Gareth Stockwell
Rajarshi, With a bit of work you could add such a feature to the script, by using compiled graphics objects (CGOs). The PyMOL documentation explains how to use them. Gareth On Tue, 2003-04-01 at 21:42, Rajarshi Guha wrote: > -BEGIN PGP SIGNED MESSAGE- > Hash: SHA1 > > Hi, > using th

Re: [PyMOL] color choices

2003-04-01 Thread Lieven Buts
Jianghai Zhu wrote: > When I use color command, how many choices do I have for colors? Can I use > direct rgb value? The color command uses color names. You can define your own colors with RGB values using the "set_color" command: set_color whatever = [ 1.0, 0.3, 0.7 ] After that you can use co

[PyMOL] color choices

2003-04-01 Thread Jianghai Zhu
Hi, all, When I use color command, how many choices do I have for colors? Can I use direct rgb value? Thanks. Jianghai -- Jianghai Zhu Biochemistry & Molecular Biology Purdue University Tel: (765)494-9247

[PyMOL] coloring surfaces

2003-04-01 Thread Rajarshi Guha
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Hi, using the color_b.py script its possible to color the surface of a molecule. Is there anyway that an indicator of the spectrum (such as a colored vertical bar showing the colors corresponding for the smallest B value to the highest B value) T

Re: [PyMOL] Movement in animations: version 2

2003-04-01 Thread Kelley Moremen
Dear Kristian, Warren, and other Pymolers: In regard to my previously stated problems in making movement animations in Pymol, I have tried the rTools plug-in before, and I tried it again after your suggestion. In my system they do not work correctly, or at least I have not installed them correctl