RE: [PyMOL] stereo parameters?

2003-07-03 Thread Warren L. DeLano
Dirk,

stereo_angle is the amount of toe-in 

stereo_shift is the horizontal displacement of the camera 

Initially, stereo_angle=2.1 and stereo_shift=2.0

Generally, you don't need to adjust stereo_angle very much.
Stereo_shift is what you want to focus on.  Try increasing it by 1 or 2.

   For hardware or cross-eye,

  set stereo_shift, 4

   For walleye,

  set stereo_angle, 1.95
  set stereo_shift, 4

Cheers,
Warren



--
mailto:war...@delanoscientific.com
Warren L. DeLano, Ph.D.
Principal Scientist
DeLano Scientific LLC
Voice (650)-346-1154 
Fax   (650)-593-4020

 -Original Message-
 From: pymol-users-ad...@lists.sourceforge.net [mailto:pymol-users-
 ad...@lists.sourceforge.net] On Behalf Of Dirk Kostrewa
 Sent: Thursday, July 03, 2003 4:06 AM
 To: PyMOLBB
 Subject: [PyMOL] stereo parameters?
 
 Dear PyMol users,
 
 my subjective stereo impression with pymol in window stereo mode is
too
 flat, both on SGI and on Linux, at least when I compare it with my
~10
 years or so experience using other applications. I started to fiddle
 around
 with the stereo parameters stereo_angle and stereo_shift, but the
 results
 were not as expected from the presumed meaning for these parameters.
Could
 anyone (maybe Warren?) please explain to me what the exact meaning of
 these
 two parameters IN PYMOL is? If I will find a subjectively better set
of
 parameters I will post them as a suggestion on this board, then.
 
 Best regards,
 
 Dirk.
 
 --
 
 
 Dirk Kostrewa
 Paul Scherrer Institut
 Life Sciences, OSRA/007
 CH-5232 Villigen PSI, Switzerland
 E-mail: dirk.kostr...@psi.ch
 Phone: +41-56-310-4722
 Fax: +41-56-310-4556
 WWW: http://www.sb.psi.ch
 
 
 
 
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[PyMOL] Re: PyMOL-users digest, Vol 1 #354 - 3 msgs

2003-07-03 Thread wgscott
When I installed X-windows pymol 0.90 on OS X using fink and try to run 
it, I get an error


/sw/bin/python: can't open file 
'/Users/delwarl/pymol/modules/pymol/__init__.py'


another user reported a different such error:

/sw/lib/pymol/modules/pymol/__init__.py:300: RuntimeWarning: Python C 
API version mismatch for module _cmd: This Python has API version 1012, 
module _cmd has version 1011.

  import _cmd




The OS X native version 0.9 works great by the way!

-- scowilg