Re: [PyMOL] New Map Formats Coming...

2003-07-12 Thread Brian Chapados
Warren, While you're adding support for new formats, I urge you to consider adding support for the UHBD grid format. There is example C code that comes with the UHBD distribution for reading and writing UHBD grids. I'm not sure how easy it is to get the source distribution for UHBD at this point

RE: [PyMOL] how to get minimum distances in script?

2003-07-12 Thread Warren L. DeLano
Seth, PyMOL is definitely behind other packages right now when it comes to geometric measurement, which is shame since Python is such a good tool for working up this stuff. We'll get there eventually though... I think a brute-force approach is currently necessary, and here is a l

[PyMOL] How to create an object which include too many Resi

2003-07-12 Thread f_zh_
Hello! I meet a problem using PyMol. I want to create an object which includes too many Resi. create aa, (resi 15,18,20,36,40,45,47,53,57,65,67,75,77,103,110,131,132,137,140,141,161,163,190,233) But the script tell me wrong. Can anyone help me How to create an object which include too many R

[PyMOL] 0.90 Two Minor Bug Advisories

2003-07-12 Thread Warren L. DeLano
Two bugs to watch out for in version 0.90: (1) When ray tracing on a light background with antialiasing enabled, a one pixel wide border may appear. To workaround this, either crop your image after saving using something like Photoshop, or simply don't antialias (just "ray" with dimensions 2X as