Todd Geders said:
Hello all,
Here is a simple script that automates the electrostatic potential
surface generation using Gromacs, MEAD, and Pymol for visualization.
It's exclusively based off of the post by Esben Peter Friis:
It requires you to massage your pdb file a bit, but it gets the job
Hi,
does anyone know how to color the inside of helices a different color
than the outsides?
thanks
Avram
--
Avram M. Slovic
Biochemistry and Molecular Biophysics
University of Pennsylvania
420 Curie Blvd.
1010 Stellar Chance Bldg.
Philadelphia, PA 19104
L:215-898-3496
Hi Avram
This is possible in cartoon mode in the newer versions of PyMOL (i don't
remember exactly from which). You have to select highlight color in the
cartoon menu. The default color is grey, but can be changed by
set cartoon_highlight_color, color_name, object_name
Cheers,
Esben
Avram,
set cartoon_highlight_color, red
Cheers,
Warren
--
mailto:war...@delanoscientific.com
Warren L. DeLano, Ph.D.
Principal Scientist
DeLano Scientific LLC
Voice (650)-346-1154
Fax (650)-593-4020
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From: pymol-users-ad...@lists.sourceforge.net
Hi,
I would like to know how to insert a movie into PowerPoint (for Mac
OS X). Should I firt convert it into an animated .gif in another
program like flash?
thanks
Avram
--
Avram M. Slovic
Biochemistry and Molecular Biophysics
University of Pennsylvania
420 Curie Blvd.
1010 Stellar
Hi all,
another question. Does anyone know how to make spheres smaller. I
would like to make the ball and stick looking residues like those in
Molscript
thank you
Avram
--
Avram M. Slovic
Biochemistry and Molecular Biophysics
University of Pennsylvania
420 Curie Blvd.
1010 Stellar Chance
Avram,
You use the sphere_scale setting:
i.e. set sphere_scale, 0.2
Best,
Ken
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