Re: [PyMOL] pyopengl broken?

2004-01-14 Thread Michael Banck
Did somebody (Warren?) look into this? Could anybody reproduce it (i.e. running examples/devel/gl01.py)? Or is this just a problem on Debian GNU/Linux? thanks, Michael This was the text of the bug report: --8-- On Fri, Oct 03, 2003 at 11:53:53AM +0200, Gabor E. Tusnady wrote: I would

[PyMOL] Restrict surface transparency to limited region

2004-01-14 Thread Roger Dodd
Dear PyMOL users/devs, I am trying to produce a figure with a molecular surface and would like to make this surface transparent only covering certain residues. I have tried creating a separate surface for these residues and the rest of the protein and setting transparency for the object

[PyMOL] Select Atom Change View

2004-01-14 Thread Douglas Kojetin
Hi All- Is it possible to do the following through the command line ... -- select an atom (say the CA of residue 25) and bring the view of the molecule within PyMOL so that 25.CA is 'up front' (or closest to the viewer's point of view)? Thanks for the input, Doug

Re: [PyMOL] Select Atom Change View

2004-01-14 Thread Lieven Buts
On Wednesday 14 January 2004 15:54, Douglas Kojetin wrote: Is it possible to do the following through the command line ... -- select an atom (say the CA of residue 25) and bring the view of the molecule within PyMOL so that 25.CA is 'up front' (or closest to the viewer's point of view)? Yes,

RE: [PyMOL] Restrict surface transparency to limited region

2004-01-14 Thread Warren L. DeLano
Roger, This isn’t possible right now. The only way to do it is to create two objects, surfacing different atoms in each object, and then enabling transparency in just one of the two objects. Cheers, Warren -- mailto:war...@delanoscientific.com Warren L. DeLano, Ph.D. Principal