Re: [PyMOL] pymol launching problems from python???

2004-03-08 Thread Taner Yildirim
Dear Warren, Thank you very much for your response. Yes, I tried ./pymol.com command and it works fine with and without the external gui. The only problem is launching pymol from python. I looked at the pymol email list and noticed similar reports. Hence I am not the only one having this

[PyMOL] How do I get PyMOL to keep TER cards?

2004-03-08 Thread Michael George Lerner
Hi, I have a file called test.pdb that looks like this: ATOM 13268 O00 U00 1945 -18.065 -4.226 1.590 ATOM 13269 H03 U00 1945 -17.394 -4.877 1.447 ATOM 13270 C04 U00 1945 -19.175 -4.837 2.212 ATOM 13271 H05 U00 1945 -19.963 -4.104 2.383 ATOM 13272 H06 U00

RE: [PyMOL] How do I get PyMOL to keep TER cards?

2004-03-08 Thread Warren DeLano
Michael, PyMOL will only insert TER records when residue identifiers are non-sequential. Cheers, Warren -Original Message- From: pymol-users-ad...@lists.sourceforge.net [mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of Michael George Lerner Sent: Monday, March 08,

RE: [PyMOL] 64-bit

2004-03-08 Thread Warren DeLano
Jason, Thanks for the kind words. It has been a while since anyone's tried to build/run PyMOL on a 64-bit system...it may not currently be 64-bit clean. We don't currently have any Opteron hardware, but if you can build under -g, crash the program under GDB, and then send me the

[PyMOL] grep settings

2004-03-08 Thread Ezequiel Panepucci
Hi There, Below is a little function (also attached) that gives you the command 'grepset' so you can grep settings using a regexp. Use it like this: ### example ### PyMOLgrepset dot|line auto_show_lineson cgo_dot_radius -1.0

Re: [PyMOL] 64-bit

2004-03-08 Thread Michael Banck
On Mon, Mar 08, 2004 at 10:55:15AM -0800, Warren DeLano wrote: It has been a while since anyone's tried to build/run PyMOL on a 64-bit system...it may not currently be 64-bit clean. For the record, 64 bit Debian packages are built on alpha and ia64 (I believe the other architectures are