[PyMOL] 3D alignment viewer of RAPTOR ?

[Joyce Ma]

Hi,

I just downloaded PROView and am trying to play around
with it. After
selecting multiple sequence alignment/structure
superposition, there are a
clutter of structures in the structure window that
makes it hard to tell
which structure corresponds to which alignment. Is
there a way to reduce the
clutter?

Thanks,

Joyce




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[PyMOL] pymol locks up - unix pipe

[Douglas Kojetin]

Hi All-

I'm using PyMOL through a UNIX pipe within a Tcl/Tk script interface.  
The script make calls to highlight certain residues, and it also uses 
the 'dist' command.  After the script makes a a few calls (20) to 
PyMOL, my PyMOL session usually locks up.


Anyone know what might be going on?  Or what I can do to resolve the 
issue?


Thanks,
Doug

RE: [PyMOL] 3D alignment viewer of RAPTOR ?

[Warren DeLano]

Joyce ( friends),

I think that these kinds of RAPTOR-specific questions are best
followed up with Bioinformatics Solutions (
http://www.bioinformaticssolutions.com ) first, rather than being posted to
PyMOL-users.  We're not (yet) familiar with how their interface works, so it
is hard for us to be helpful to you.

Cheers,
Warren


 -Original Message-
 From: pymol-users-ad...@lists.sourceforge.net 
 [mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of Joyce Ma
 Sent: Monday, April 19, 2004 11:21 AM
 To: pymol-users@lists.sourceforge.net
 Subject: [PyMOL] 3D alignment viewer of RAPTOR ?
 
 Hi,
 
 I just downloaded PROView and am trying to play around with 
 it. After selecting multiple sequence alignment/structure 
 superposition, there are a clutter of structures in the 
 structure window that makes it hard to tell which structure 
 corresponds to which alignment. Is there a way to reduce the clutter?
 
 Thanks,
 
 Joyce
 
 
   
   
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 Do you Yahoo!?
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 http://photos.yahoo.com/ph/print_splash
 
 
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[PyMOL] map_double v0.95?

[Mark Wilke]

Is the command map_double no longer supported in ver0.95?  Is there a
replacement command?  How do I generate a similar effect?

- Mark