RE: [PyMOL] White surface problem

2004-05-07 Thread Warren DeLano
Einari,

 I can't get white surface look really 
 white. Is there a way to do this ?

Yes: increased the ambient light setting.

   set ambient, 0.4
   ray

Cheers,
Warren



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Warren L. DeLano, Ph.D.
Principal Scientist
DeLano Scientific LLC
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Fax   (650)-593-4020
  

 -Original Message-
 From: pymol-users-ad...@lists.sourceforge.net 
 [mailto:pymol-users-ad...@lists.sourceforge.net] On Behalf Of 
 Einari Niskanen
 Sent: Friday, May 07, 2004 12:16 AM
 To: pymol-users@lists.sourceforge.net
 Subject: [PyMOL] White surface problem
 
 Hi all PyMOL users !
 
 I am trying to make surface pictures of protein with white 
 surface, background colour being gray. Problem is that upon 
 ray-tracing white surface becomes grayish because of 
 shadowing and doesn't look too good on gray background. I 
 have removed shadowing ( set ray_shadows = 0 ) and fog to get 
 2-D feeling, but I can't get white surface look really 
 white. Is there a way to do this ?
 
 Thanks in advance !
 
 Einari Niskanen  
 
 
 
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Re: [PyMOL] Powermate dial with Pymol on OS X

2004-05-07 Thread Ezequiel Panepucci
Nat, 

The short answer to your question is yes. I have developed
a small python driver and an extension to pymol that allows
you to use any USB input device as a 3D controller.

It works with any USB device that generates events on 
/dev/input/event*

I have also a torsion function that you can use to change
dihedrals interactively on any amino acid using your altrnate 3D
input device.

In my opinion the best input device for this is a trackball
with many buttons (Kensington Expert Mouse Pro Trackball).
This model has a scroll wheel that you can configure to change
rotamers of the currently Pk1 selection if you scroll it while
keeping the scroll wheel pressed.

Check my webpage for details:
http://atb.slac.stanford.edu/~zac/pymol/

Cheers,
Zac

On Thu, 6 May 2004, Nat Echols wrote:

| 
| I'm very curious about this dial all of a sudden - I just started doing
| refinements, and I'd love to use my laptop as much as possible instead of
| our slow old SGIs.  Has anyone used it on Linux?  How's it work with O?
| Could it theoretically be programmed to, say, flip through rotamer
| libraries or tweak torsion angles in PyMOL, with some additions to the
| Python layer?  $40 isn't a lot of it's a decent partial replacement for
| SGI dial boxes.
| 
| thanks,
| Nat
| 
| 
| 
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| Learn developer strategies Cisco, Motorola, Ericsson  Lucent use to deliver
| higher performing products faster, at low TCO.
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 Ezequiel Panepucci, Ph.D. - Laboratory of Prof. Axel Brunger
 HHMI - Stanford University
 Phone: 650-736-1714 Cell:  650-714-9414