[PyMOL] How to make spacefill effect?

2004-08-12 Thread Liu Shiyong
Where is the sphere usage? thanks

[PyMOL] transparent background

2004-08-12 Thread Douglas Kojetin
Hi All- Is it possible to create an image in PyMOL with a transparent background (without having to feed it through a second program, such as the ImageMagick suite)? rant: MS PowerPoint has the ability to make images transparent, however Apple's Keynote does not -- a missing feature that's

RE: [PyMOL] transparent background

2004-08-12 Thread Cartailler, Jean-Philippe
Set the ray_opaque_background to off The PNG file format supports transparency. Render your scene with the above, open up in an image editor and you should have a transparent background. JP -Original Message- From: pymol-users-ad...@lists.sourceforge.net

Re: [PyMOL] transparent background

2004-08-12 Thread Douglas Kojetin
Works perfectly. Many thanks. If anyone has any strong arguments for Apple's Keynote over MS's Powerpoint, I'd be interested in hearing them (off list or on). Thanks again, Doug On Aug 12, 2004, at 12:11 PM, Cartailler, Jean-Philippe wrote: Set the ray_opaque_background to off The PNG

[PyMOL] How to make spacefill effect?

2004-08-12 Thread Scott Classen
Liu, I'm not exactly sure what you are asking, but if you look to the right side of the internal GUI you will see some small square buttons. One of the has the letter S on it which stands for Show. If you click and hold this button down you will be offered several choices. Nine lines down is

[PyMOL] Sharp 3D Display (was:RE: [ccp4bb]: stereo glasses)

2004-08-12 Thread Warren DeLano
Ian, Yes, I have gotten PyMOL to work with the laptop version of this display (just Windows so far). The stereo effect is quite good. However, your head does need to be in just this right spot in order to get the effect. After 15 minutes, I learned to do this automatically, moving slightly off

[PyMOL] Thermal Ellipsoids

2004-08-12 Thread Luke Rice
Hi all, I hoping to not have to revert to molscript for something. Any ways to look at thermal ellipsoids a la rastep in pymol? Thanks, Luke