Dear all,
My name is Marcelo and I am a basic-level pymol user. I work with docking
programs and I am trying to make pymol our default program for analysing
docking results...this brings me to some questions:
Is it possible to colour protein surface according to Hydrogen
donor/acceptor properties
What I did so that I could use the labels command was read the coordinates
in twice. One copy was used for display, the second copy had no
atoms/representations
displays, but instead I attatched labels to the atoms on the second copy and
then moved these atoms around (and thusly the labels) till t
Hi,
I could be wrong about this, but there are a couple of very picky
alignment/fitting commands in PyMOL, and I think this is one of them. If
it's one of the picky ones, it'll only work if everything about the two
selections looks the same. In this case, your residue ids don't match up.
Can you
Hey all,
just the other day I discovered a nifty command in pymol.
rms_cur selection1, selection2
determines the deviation between two (previously aligned) selections
without doing a fit. Here's what I do:
rms_cur (object1 and i. 20:29 and (name c,o,n,ca)), (object2 and i.
30:39 and (name c
hello everybody,
shouldn't it be possible to extract the proper rotation for the cgo
labels
from the view matrix ?
i have been trying arount a few things, but was not so succesful so far.
my idea was, to
- extract the coordinates of the atom i want from the pdb file. either
from within pymol or
I am working on a plugin that entails coloring residues based on a
value. Right now creating a new color for each residue and setting the
color corresponding works, BUT it is very inefficient and takes more
than a tolerable amount of time to display. Is there a better approach?
It is possib
On Fri, Aug 20, 2004 at 09:37:00AM -0700, chuit...@interchange.ubc.ca wrote:
> >In any case, you ask a useful question: I too would like to know
> >what license, if any, is granted by the tutorial's authors. If
> >released under an appropriate license, it could be modified for
> >Linux/Unix/MacOS
