[PyMOL] python script question

2004-10-28 Thread Scott Classen
Hello PyMol gurus, I am trying to make a simple movie with my molecule rotating 360 degrees. There are two molecules superimposed and one of them is turned on for 6 frames then off for 6 frames. Hopefully this won't give anyone epileptic seizures. So here is a part of my python script. The

[PyMOL] hbond criteria in distance mode=2?

2004-10-28 Thread Seth Harris
Hello PyMOLers, I am displaying hydrogen bonds using: distance hbond, protein, ligand, mode=2 which makes some nice dashed lines for hydrogen bonds but doesn't always display all the hbonds one might expect. For instance, in some cases there are is an N on the ligand molecule and a backbone