[PyMOL] electron density around the object

I am using pymol 0.97 version, I tried to contour the electron density around the object I selected like, load d1.pdb, d1 isomesh mesh1, map1, 1.0, (d1), carve=4.0 I can able to display the map, but i could not display around the object. any help might be useful thanks vk = Kabaleeswaran

Re: [PyMOL] Coloring gradient

Will this work for what you want to do? spectrum palette=green_yellow Dear All, I'm trying to color a protein cartoon structure from N- to C-terminal with a green to yellow gradient. Had a browse around and couldn't quite find the correct command. Any pointers are welcomed. Peter

RE: [PyMOL] Coloring gradient

count is the operator you're looking for: spectrum count, green_yellow, selection=50-100/ Cheers, Warren -- mailto:war...@delsci.com Warren L. DeLano, Ph.D. Principal Scientist, DeLano Scientific LLC, 400 Oyster Point Blvd., Suite 213, South San Francisco, CA 94080 Biz:(650)-872-0942

Re: [PyMOL] ribbon view of c-alpha only coordinates

On Monday 01 November 2004 18:05, Cathy Lawson wrote: Some PDB files (notably models fitted into EM density) contain only C-alpha coordinates. When read into Pymol, Ive found that the coordinates appear as a constellation of individual atoms, and selecting a ribbon view doesn't connect them