[PyMOL] parameters for sculpt?
Under the Build/sculpting/restraints menu in the new MacPymol beta, there are some options for sculpting, but they're greyed out. Are any of these options reachable through the menu or command line? Specifically, can Sculpt be tuned to retain bond length and perhaps bond angle, while permitting free torsion? Are these options available in any of the other versions of Pymol? Thanks! Morgan __ Morgan Ryan Development editor 209 Adams Way Chapel Hill, NC 27516 919-942-4890 651-846-5265 (f) mry...@nc.rr.com
[PyMOL] pymol displays c alpha as nonbonded
Dear All, I am trying display a c-alpha model in pymol (1qo1), when the file is opened all the atoms are displayed as non-bonded. Is there a way to tell pymol that this is a c-alpha trace and display it as a cartoon? Many thanks in advance, Matt. Matthew Bowler MRC Dunn Human Nutrition Unit Wellcome Trust / MRC Building Hills Rd Cambridge CB2 2XY Tel: 01223 252826 Fax: 01223 252825
Re: [PyMOL] pymol displays c alpha as nonbonded
Hi Matthew, You want: 'set ribbon_trace,1' or 'set cartoon_trace,1' Jules Matthew Bowler wrote: Dear All, I am trying display a c-alpha model in pymol (1qo1), when the file is opened all the atoms are displayed as non-bonded. Is there a way to tell pymol that this is a c-alpha trace and display it as a cartoon? Many thanks in advance, Matt. Matthew Bowler MRC Dunn Human Nutrition Unit Wellcome Trust / MRC Building Hills Rd Cambridge CB2 2XY Tel: 01223 252826 Fax: 01223 252825 --- This SF.Net email is sponsored by: InterSystems CACHE FREE OODBMS DOWNLOAD - A multidimensional database that combines robust object and relational technologies, making it a perfect match for Java, C++,COM, XML, ODBC and JDBC. www.intersystems.com/match8 ___ PyMOL-users mailing list PyMOL-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pymol-users
[PyMOL] zoom size
Hi, Is there a way to zoom by a fixed distance with respect to the viewport? Something like the window command in molscript, so that different molecules can be viewed/rendered at the same scale. Thanks, Indraneel Majumdar -- Univ of Texas SouthWestern Medical Center at Dallas Tel: 214-648-2499
