Hi,
* Lisa Craig licr...@sfu.ca [2005-01-27 20:43] wrote:
How do I select side chains without selecting the backbone atoms?
Add ! n. n+ca+c+o or in long form and not name n+ca+c+o to your
selection. So to colour all arginine and lysine side chains blue:
color blue, r. arg+lys ! n.
Dear PyMOL community,
I am trying to use the align command (from within python)
and want to evaluate the pairwise matches.
the command
cmd.align(sel1, sel2, object=alignment)
should do. Sorry for this stupid question,
but how do I get hold of the alignment object, and what is its
Andreas,
It's not a stupid question -- its just a year or more ahead of its time.
Right now aligment objects currently don't do anything other than show you
which atoms were aligned in the 3D viewer. In time however, those objects
will integrate with the sequence-viewer...
Cheers,
Warren
hi,
i want to combine the models in a biounit file. for example,
ftp://ftp.rcsb.org/pub/pdb/data/biounit/coordinates/divided/ky/1kyw.pdb2.gz
has two models. so, i
- load it
- split_states on it
- save everything into a pdb file
but .. the pdb file ends up empty (it's just an END line).
