Re: [PyMOL] surfaces and transparency

2005-03-16 Thread Virgile ADAM
Dear Paula, for smoothen rendering, you can use the smooth, set ribbon_smooth... commands or try to raytrace your molecule thanks to the ray command. Concerning transparency, there is no simple way to my knowledge to render transparency on some of the residues of a single loaded protein. You

RE: [PyMOL] surfaces and transparency

2005-03-16 Thread Garcia, Tzintzuni I.
To smooth your surface representation try: set surface_quality, 1 or higher if you wish, though it will take longer and might look odd. The easiest way to do the other things would be to create separate objects for each type of display. Example: Show solid surface over most of a protein, with

[PyMOL] moving molecules separately

2005-03-16 Thread Joel Tyndall
Hi again, I found it! Fore those who have the same question, In 3 button edititing mode (click in the bottom right to toggle), if you click and hold on the molecule with shift down it moves on its own! Sorry to clog up the box but its always the way ...as soon as you ask, you remember!