RE: [PyMOL] Macros...

2005-09-20 Thread Grégori Gerebtzoff
Hi Simon, Before I start I have to say that I never ever used neither cctbx nor draw_cell.py. I installed Python 2.4.1 and cctbx 2005_08_18_0201 on my WinXP machine. I then had a look to the Roger Dodd's Solution and found out that I cannot work properly since the file

[PyMOL] PyMOL and cctbx

2005-09-20 Thread Roger Dodd
Dear Simon and other pymolers, I have realised that the solution to getting cctbx working with pymol on windows I posted no longer works with recent builds of cctbx. I have found that the following solution works: 1. Download and install python (to the default location - C:\Python24) --

[PyMOL] alignment question

2005-09-20 Thread Marc Bruning
hello, is there any possibility to get a list of the pairs of atoms that are matched using the align command? cheers, marc

[PyMOL] cctbx woe's, continued

2005-09-20 Thread Simon Kolstoe
Hi, thanks for all the advice so far. I followed Roger Dodd's alternative instructions after uninstalling everything, however this time got the error: Exception in plugin 'draw_cell' -- Traceback follows... Traceback (most recent call last): File C:\Program Files\DeLano

Re: [PyMOL] cctbx woe's, continued

2005-09-20 Thread Peter Adrian Meyer
Simon, I then tried to follow Peter Myers instructions by adding the cctbx Meyer, not Myers (not that it matters much). directory to the sys.path, however as I have two directories called cctbx_build and cctbx_sources was not sure which should be added? Probably cctbx_build. If in doubt,

RE: [PyMOL] rot+trsl matrices

2005-09-20 Thread Xavier Siebert
Dear Warren (and others who might be interested - Zac, Robert ?): Thank you for the cmd.get_object_matrix(object-name), this is what we were looking for. Or almost, here are a few comments : 1) We were also looking for an equivalent cmd_set_object_matrix or something like that, but could not