[PyMOL] OS X 10.4.3 comment
Quite a shock to read about the OS X 10.4.3 problem. I upgraded without a second thought and now I have the same problem on my 12" powerbook. This is with beta14 I believe. When I try the single window beta19 it seems to be less of a problem. -Mark _ Mark A. Saper, Ph.D. Associate Professor of Biological Chemistry Biophysics Research Division, University of Michigan Chemistry Building Room 3040 930 N University Ave Ann Arbor MI 48109-1055 U.S.A. sa...@umich.edu(734) 764-3353fax (734) 764-3323 http://www.biochem.med.umich.edu/biochem/research/profiles/saper.html
[PyMOL] Independent Rotation axis...
Hi All, I was wondering if anyone know if there is anyway to assign independent rotation axis to two different proteins within Pymol. Specifically, I amintersted in having two molecules rotate about individual axis in a movie sequence. Thanks, Nate Butlin UCDavis - Chemistry ngbut...@ucdavis.edu
Re: [PyMOL] Mac OS X 10.4.3
I don't know if it will make a difference (I don't even have a Mac) but try opening it from a console using: pymol -M Serge Cohen wrote: -BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Got exactly the same problem on a 800MHz TiBook I was planning to try on a Dual G5, but had not the time today... Serge. Le 3 nov. 05 à 23:05, Brian J Goodfellow a écrit : Hi Mac users, has anyone noticed an annoying flickering appearing when rotating a molecule in PymolX11 and MacPyMOL under 10.4.3 that wasn't present under 10.4.2? The problem appears on both my iBookG4 and iMacG5. If the window is moved then the flickering disappears. However, if a ray trace is then drawn the problem starts again until the window is moved again - very annoying! Brian Goodfellow *** Dr. Serge COHEN GPG Key ID: 9CBB58FB N.K.I. Department of Molecular Carcinogenesis Plesmanlaan 121 1066 CX Amsterdam; NL E-Mail: s.co...@nki.nl Tel : +31 20 512 2053 *** -BEGIN PGP SIGNATURE- Version: GnuPG v1.4.1 (Darwin) iD8DBQFDapuW5EPeG5y7WPsRAlA1AJ93hPA3eALJX10AQ/HVo7J6dA914gCeMz1E AJkFJDwrG820njkblBCpqeE= =F8UC -END PGP SIGNATURE- --- SF.Net email is sponsored by: Tame your development challenges with Apache's Geronimo App Server. Download it for free - -and be entered to win a 42" plasma tv or your very own Sony(tm)PSP. Click here to play: http://sourceforge.net/geronimo.php ___ PyMOL-users mailing list PyMOL-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pymol-users
[PyMOL] problem with CASTp plugin
Hello, We are running Python v2.2.3 on Red Hat Enterprise 3 which is almost like Red Hat 9 and/or Fedora Core 1. Our RedHat version seems to be choking on the pyc file. The following is the error we get. Exception in plugin 'CASTpyMOL' -- Traceback follows... Traceback (most recent call last): File "modules/pmg_tk/PMGApp.py", line 109, in initialize_plugins ImportError: Bad magic number in /usr/lib/python2.2/site-packages/pymol/modules/pmg_tk/startup/CASTpyMOL. pyc Error: unable to initialize plugin 'CASTpyMOL'. We have contacted the plugin authors but have been unable to solve this problem. Thanks, JJ __ Look What The New Netscape.com Can Do! Now you can preview dozens of stories and have the ones you select delivered to you without ever leaving the Top Home Page. And the new Tool Box gives you one click access to local Movie times, Maps, White Pages and more. See for yourself at http://netcenter.netscape.com/netcenter/
Re: [PyMOL] Mac OS X 10.4.3
-BEGIN PGP SIGNED MESSAGE- Hash: SHA1 Got exactly the same problem on a 800MHz TiBook I was planning to try on a Dual G5, but had not the time today... Serge. Le 3 nov. 05 à 23:05, Brian J Goodfellow a écrit : Hi Mac users, has anyone noticed an annoying flickering appearing when rotating a molecule in PymolX11 and MacPyMOL under 10.4.3 that wasn't present under 10.4.2? The problem appears on both my iBookG4 and iMacG5. If the window is moved then the flickering disappears. However, if a ray trace is then drawn the problem starts again until the window is moved again - very annoying! Brian Goodfellow *** Dr. Serge COHEN GPG Key ID: 9CBB58FB N.K.I. Department of Molecular Carcinogenesis Plesmanlaan 121 1066 CX Amsterdam; NL E-Mail: s.co...@nki.nl Tel : +31 20 512 2053 *** -BEGIN PGP SIGNATURE- Version: GnuPG v1.4.1 (Darwin) iD8DBQFDapuW5EPeG5y7WPsRAlA1AJ93hPA3eALJX10AQ/HVo7J6dA914gCeMz1E AJkFJDwrG820njkblBCpqeE= =F8UC -END PGP SIGNATURE-
Re: [PyMOL] Mac OS X 10.4.3
Yes, its annoying me too (powerbook G4). Flickers even with the MacPyMOL_beta version. James Dr. James Stevens Asst. Prof., Dept. of Molecular Biology The Scripps Research Institute 10550 North Torrey Pines Road-BCC206 La Jolla CA 92037 USA Tel. (858)-784-9878 Fax. (858)-784-2980 E-mail. jstev...@scripps.edu On Thu, 3 Nov 2005, Brian J Goodfellow wrote: Hi Mac users, has anyone noticed an annoying flickering appearing when rotating a molecule in PymolX11 and MacPyMOL under 10.4.3 that wasn't present under 10.4.2? The problem appears on both my iBookG4 and iMacG5. If the window is moved then the flickering disappears. However, if a ray trace is then drawn the problem starts again until the window is moved again - very annoying! Brian Goodfellow *** Brian J Goodfellow Departamento de QuÌmica Universidade de Aveiro 3810-193 Aveiro, Portugal Tel: +351 234 401506, Fax: +351 234 370084 http://www.dq.ua.pt/ingles/index_mem.htm *** --- SF.Net email is sponsored by: Tame your development challenges with Apache's Geronimo App Server. Download it for free - -and be entered to win a 42" plasma tv or your very own Sony(tm)PSP. Click here to play: http://sourceforge.net/geronimo.php ___ PyMOL-users mailing list PyMOL-users@lists.sourceforge.net https://lists.sourceforge.net/lists/listinfo/pymol-users
[PyMOL] Mac OS X 10.4.3
Hi Mac users, has anyone noticed an annoying flickering appearing when rotating a molecule in PymolX11 and MacPyMOL under 10.4.3 that wasn't present under 10.4.2? The problem appears on both my iBookG4 and iMacG5. If the window is moved then the flickering disappears. However, if a ray trace is then drawn the problem starts again until the window is moved again - very annoying! Brian Goodfellow *** Brian J Goodfellow Departamento de QuÌmica Universidade de Aveiro 3810-193 Aveiro, Portugal Tel: +351 234 401506, Fax: +351 234 370084 http://www.dq.ua.pt/ingles/index_mem.htm ***
