[PyMOL] label in Greek letters

Hi All users, I am a PyMOL ver.0.99rc6 (Win and Linux) user. Now I want to label with chain ID ( A, B, G,... for alpha, beta, gamma,...) in Greek letters. I have tried it following http://www.pymolwiki.org/index.php/Label#UTF8_Fonts , but the output corresponds to "\316\261" has not been printed. P

[PyMOL] Runtime Error

Dear All, Does anyone have the same runtime error, by applying the command, [ray] or [show surface], on big size protein, e.g. 1AON, etc? PyMOL Version: 0.99 System: Dell 9100 OS: Windows XP + SP2 CPU: Intel P4 3.0G RAM: 1.5G Video Card: nVidia GeForce 6800, 256M Thanks, Zheng <>

[PyMOL] AMD64 X2+Quadro FX1300+Fedora5

Dear all, I thought to be worth posting this message for those who experience problems with dual core+quadro FX. It seems that only recently kernel and compatible driver became available. We succeeded installing PyMOL in a AMD64 X2+Quadro FX1300+Fedora5. After installing Fedora 5 (which seems

Re: [PyMOL] alternate conformations

Tina, A work-around that does something like what you are looking for is: load protein_with_alts.pdb, A load protein_with_alts.pdb, B hide everything, show sticks, A and alt A show sticks, B and alt B set stick_ball, 1, B set stick_overlap, -1.8, B Cheers, -bob On 5/23/06, Nguyen, Tina (GSBS)

RE: [PyMOL] biological unit

Hi Jacob, Thank you so much for your reply! Actually, I want to show how the virus HK97 evolve from Prohead (PDB ID: 1if0) to Head (PDB ID: 1ohg) state. There are some intermediate states from our calculation. All the PDB files are Biological Unit files. However, if you load a biological unit

[PyMOL] alternate conformations

Hi, I would like to represent my alternate conformations by showing one residue in dashed sticks and the other in solid sticks. Can anyone help me with that? Tina Nguyen Graduate Student University of Massachusetts Medical School

Re: [PyMOL] Is there any way to show the coordinates?

Hi Ron, Check the commands get_view set_view Cheers, Tsjerk On 5/23/06, Ronald Chiu wrote: Hello All, Is there any way to show the coordinates for the orientation that a protein is in? Lets say you tweak (rotate and turn) a protein in to a particular orientation, is there any way to tell

[PyMOL] Is there any way to show the coordinates?

Hello All, Is there any way to show the coordinates for the orientation that a protein is in? Lets say you tweak (rotate and turn) a protein in to a particular orientation, is there any way to tell pymol to display the coorindates for that orientation. So that you could just manually input those

Re: [PyMOL] assigning properites

Hi Frank, These settings apply to objects, if specified. set cartoon_trace,1,object1 will make it apply only to object1 Cheers, Tsjerk On 5/23/06, Frank Murphy wrote: Hello, I was wondering if anyone out there has connived a way to assign different properties to different objects (proper

[PyMOL] assigning properites

Hello, I was wondering if anyone out there has connived a way to assign different properties to different objects (properties that are normally universal)? For example, setting cartoon_trace to different values so one could draw cartoons for CA-only and full atomic models in the same session

RE: [PyMOL] Atom Color

I use this a lot - I simply duplicate the object and show one object as sticks in the desired color, and the other as spheres in other colors. The size of the spheres can be controlled with set sphere_scale, 0.3, myobject where 0.3 is the scaling relative to the default van der Waals radii.