Hi,
You can do this using alter_state:
alter_state 1,selection,(x,y,z) =
(a11*x+a12*y+a13*z+d1, a21*x+a22*y+a23*z+d2,
a31*x+a32*y+a33*z+d3)
where a11-a33 are the matrix elements (check whether they have to be
transposed) and d1-d3 are the elements of the shift vector.
It may
Hi Michael,
I think we face confusion between different types of radii... However I'm
not a chemist.
In PyMOL, what the "sphere" representation shows is the van der Waals
radius, which by definition is determined from measurements of atomic
spacing between pairs of unbonded atoms in crystals (wiki