[PyMOL] Pymol sans display

2006-07-21 Thread Philippe . Garteiser-1
Hello list ! I need to work with a very large pdb file that stalls my pymol. Hence, I have tried to launch pymol with the -c switch, to no success. Under WindowsXP, pymol starts as usual, but disappears as soon as it is loaded. I tried also on a linux distribution (mepis). The console prints th

[PyMOL] load_brick problem fixed.

2006-07-21 Thread Esben Jannik Bjerrum
The brick01.py script and also load_brick seem to want Numpy support compiled into pymol. (Which is isnt on the linux versions, but is on mac/windows). Thanks to Warren for troubleshooting. Heres what I did to make it work on Ubuntu 606. I already had python-numeric installed. sudo apt-get build

Re: [PyMOL] movie with 3 molecules

2006-07-21 Thread Tsjerk Wassenaar
Hi Adrien, You don't really need the double loop, I'd say. What about: for i in range(1,20): cmd.load("o.%03d.1.pdb"%i,"m1") cmd.load("o.%03d.2.pdb"%i,"m2") cmd.load("o.%03d.3.pdb"%i,"m3") cmd.hide("everything") cmd.show("spheres") cmd.ray() cmd.png("o.%03d.png"%i) By the w