[PyMOL] How to superimpose two ligands?

Feng, Kabsch can do this, possibly. I just tested two proteins (1cll and 1ggz) which both have 4 calciums at very similar locations: PyMOL> load 1cll.pdb PyMOL> load 1ggz.pdb PyMOL> optAlign 1cll and e. CA, 1GGZ and e. CA RMSD=2.254852 You could try that. Kabsch (and optAlign) can be found o

[PyMOL] How to superimpose two ligands?

Hi Everyone, Could someone tell me how to perform superimposition of two or more ligands from different PDBs? Thanks in advance. Feng. pymol-users-requ...@lists.sourceforge.net wrote: Send PyMOL-users mailing list submissions to pymol-users@lists.sourceforge.net To subscribe or unsubscribe