[PyMOL] search for subsequences in PyMOL

2007-09-09 Thread Michael Weber
Hi, maybe this has been asked before, but I could not find any hints concerning this issue in the PyMOL wiki, so here it goes: I am trying to build a computer model for a yet structurally uncharacterized non-coding bacterial RNA molecule. To do this, I have already constructed a consensus

[PyMOL] bonds persisting in movie

2007-09-09 Thread Killer Meatball
Hi, I'm loading a sequence of .pdb files into a movie using the script: for file in file_list: cmd.load(file,mov) cmd.mset(1 -%d%len(file_list)) The problem is that some bonds (conect records in the .pdb files) are persisting in the movie even after they are no longer in the