[PyMOL] curved cylinders in PyMOL

[Michael Oldham]

I wish to depict my protein with a cylindrical cartoon representation,  
but I wish to draw the cylinders so they contour to the shape of bent  
and curved helices instead of making a regular cylinder between the  
two residues indicated. Can this be done in PyMOL.  Thanks

Re: [PyMOL] curved cylinders in PyMOL

[DeLano Scientific]

Michael,

Sorry, this isn't something PyMOL is presently capable of doing.

Cheers,
Warren

--
DeLano Scientific LLC
Subscriber Support Services
mailto:supp...@delsci.com


-Original Message-
From: pymol-users-boun...@lists.sourceforge.net
[mailto:pymol-users-boun...@lists.sourceforge.net] On Behalf Of Michael
Oldham
Sent: Sunday, September 07, 2008 3:16 PM
To: pymol-users@lists.sourceforge.net
Subject: [PyMOL] curved cylinders in PyMOL

I wish to depict my protein with a cylindrical cartoon representation, but I
wish to draw the cylinders so they contour to the shape of bent and curved
helices instead of making a regular cylinder between the two residues
indicated. Can this be done in PyMOL.  Thanks

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[PyMOL] fill a cavity with a closed polygon

[Jed Goldstone]

Is it possible to fill a cavity (e.g. a CASTp-derived one) with discrete 
spheres (as per the examples on the CASTp site obtained with RasMol) or a
closed polygon (as visualized by ICM) rather than a surface mapped to the
residue surfaces? 
--
Jed Goldstone
Visting Investigator
Woods Hole Oceanographic Institution
Redfield 3-52 MS #32
Woods Hole, MA  02543   
http://www.mit.edu/people/jedgold/home.html
(508) 685-2253 (cell/home) (508) 289-4823 (work/WHOI)