Hello,
I was going through the PDB file specification.. there are some PDB files
that doesn't have CONECT records, but pymol still manages to draw them
connected together (just from the ATOM records). How is this done?
I tried searching on this, but since I don't really come from bio/chemistry
Yose,
By default, PyMOL guesses connectivity based on proximity, based on the
empirical observation that two atoms of a given radius will not be generally
closer than a certain distance unless they are bonded.
Cheers,
Warren
_
From: pymol-users-boun...@lists.sourceforge.net
I see, so that's something like using the Van der Waals radius, etc? I guess
this kind of stuff does need chemistry background (tried researching on
that).
Cheers
On Sat, Sep 13, 2008 at 4:13 AM, DeLano Scientific del...@delsci.infowrote:
Yose,
By default, PyMOL guesses connectivity based
