[PyMOL] Showing conserved residues

2009-01-29 Thread Abhinav Kumar
Hi, Is there someway to select and show conserved residues when a bunch of superimposed structures are loaded into Pymol? And if so, can identical and similar residues be selected separately? -- Thanks Abhinav Stanford Synchrotron Radiation Laboratory Joint Center for Structural Genomics

[PyMOL] mapping sequence conservation metrics on the B factor column ...

2009-01-29 Thread Anastassis Perrakis
Dear all, I was wondering what is the state of the art for this old dark art ... are there any good servers / programs that allow to easily upload your own sequence alignments or create a 'transparent' alignment (I want to see the alignment first and not a total black box) and then allow

Re: [PyMOL] Showing conserved residues

2009-01-29 Thread Robert Campbell
Hi Abhinav, On Thu, 29 Jan 2009 13:10:25 -0800, Abhinav Kumar abhin...@slac.stanford.edu wrote: Is there someway to select and show conserved residues when a bunch of superimposed structures are loaded into Pymol? And if so, can identical and similar residues be selected separately? I don't