[PyMOL] Viewport dimensions query

2009-09-24 Thread Schubert, Carsten [PRDUS]
Hi, Does anyone know how to get a hold of the viewport dimensions from within a script? I vaguely remember some posts about this subject, but could not find anything in my archive. Thanks Carsten -- Come build

Re: [PyMOL] Viewport dimensions query

2009-09-24 Thread Folmer Fredslund
Hi Carsten, Is this what you are looking for? http://www.mail-archive.com/pymol-users@lists.sourceforge.net/msg05888.html Best regards, Folmer Fredslund 2009/9/24 Schubert, Carsten [PRDUS] cschu...@its.jnj.com: Hi, Does anyone know how to  get a hold of the viewport dimensions from within a

Re: [PyMOL] Viewport dimensions query

2009-09-24 Thread Schubert, Carsten [PRDUS]
Yep, thanks Folmer -Original Message- From: Folmer Fredslund [mailto:folm...@gmail.com] Sent: Thursday, September 24, 2009 9:33 AM To: pymol-users@lists.sourceforge.net Subject: Re: [PyMOL] Viewport dimensions query Hi Carsten, Is this what you are looking for?

Re: [PyMOL] Loading PDB Files does not work with Linux

2009-09-24 Thread Warren DeLano
Joachim, PyMOL relies entirely upon Python's built-in proxy support (via urllib), so if you can get a Python script configured to work properly through your proxy, then PyMOL should work as well. http://www.python.org/doc/2.5.2/lib/module-urllib.html Cheers, Warren

[PyMOL] Pymol segmentation fault

2009-09-24 Thread Ian Berke
Hi, I'm having an issue trying to run various plugins in pymol (apbs and autodock). Whenever I select a button that should bring up a file browser to choose a file (e.g. Choose Externally generated pqr in apbs) Pymol exits with: Segmentation fault (core dumped). Same thing happens when I go to

Re: [PyMOL] Pymol segmentation fault

2009-09-24 Thread Warren DeLano
Ian, Based on that traceback, it looks like you have two conflicting versions of Tcl (8.4 as well as 8.5) linked against and running in the same process...that could be the source of the crash. Cheers, Warren From: Ian Berke

Re: [PyMOL] Pymol segmentation fault

2009-09-24 Thread Pete Meyer
Does anyone have any thoughts? Two things to try that may or may not help: 1. Check if the problem persists when running pymol in single-threaded mode (cmd.set('max_threads',1)). libpthread in the trace might indicate that one of the libraries is having issues with multiple threads. 2. On

Re: [PyMOL] Pymol segmentation fault

2009-09-24 Thread Ian Berke
Thank you! This was indeed the case. I have no idea why tcl/tk 8.4 was installed with 8.5 at the same time. Removing 8.4 and using 8.5 seems to have fixed the problem. Ian On Thu, Sep 24, 2009 at 2:38 PM, Warren DeLano war...@delsci.com wrote: Ian, Based on that traceback, it looks like