Re: [PyMOL] Autodock/Vina Pymol Plugin Windows problem

Hi Jed, sorry for the late reply. The plugin so far doesn't work properly on windows and mac (at least that's what users report. I don't have a windows PyMOL to test it). Could you send me your input files? I'd like to test it on linux to see if there's a problem with the files or something

[PyMOL] unable to initialize plugin

Hi all, I have some problems after the installation of plugins in PyMOL. I downloaded some plugins from the pymol wiki and copied them in the indicated directory (such as C:\Programs\DeLano Scientific\PyMOL\modules\pmg_tk\startup). I installed them by the PyMOL interface and restarted the

Re: [PyMOL] unable to initialize plugin

Ilaria, Which plugin are you trying to use? Also, please beware that scripts and plugins are different and have different methods of install. Lastly are you using PyMOL 0.99, 1.x? -- Jason -- Jason Vertrees, PhD PyMOLWiki -- http://www.pymolwiki.org On Fri, Jan 8, 2010 at 9:21 AM, ilaria

Re: [PyMOL] unable to initialize plugin

This sounds familiar. I think I ran into the same thing with the APBS plugin when upgrading PyMOL at one point. On Fri, Jan 8, 2010 at 11:51 AM, Jason Vertrees jason.vertr...@gmail.comwrote: Ilaria, Which plugin are you trying to use? Also, please beware that scripts and plugins are

[PyMOL] acquisition of PyMOL by Schrodinger

All -- from the PyMOL web site: ANNOUNCEMENT On January 8, 2010 Schrödinger http://www.schrodinger.com/ reached an agreement with the estate of the late Dr. Warren L. DeLano http://www.jmdelano.com/ to acquire PyMOL. Schrödinger will take over continued development and maintenance,

[PyMOL] PyMOL Schrodinger

PyMOLers, After the tragic loss of Warren, his wife Beth has been working nonstop to preserve PyMOL, his legacy. Today, after nearly two months of deliberation, she has sold PyMOL and its intellectual property to Schrodinger (http://www.schrodinger.com/), a scientific software company. PyMOL

Re: [PyMOL] acquisition of PyMOL by Schrodinger

Tom, Man you guys are quick. Here's the rest of Schrodinger's press release: Under the agreement, Schrödinger will take over continued development and maintenance, as well as support and sales of PyMOL, including all current subscriptions. Schrödinger will also continue to actively support the

[PyMOL] select atoms near electron density

Dear PyMol users, I wonder if anyone knows a way to select atoms that are near a region of electron density. Say I have a binding pocket in atomic detail, but the ligand binds transiently and non-specifically, so I just have an approximate electron density could for it. Is it possible to select