Thanks for your help Jason and David!
I'll have a look at your suggestions, although I solved my problem in a
different way. I just copied the coordinates of the important symmetry mates
into the pdb file containing the original molecule of protein B (and set up a
new chain for each of the sym
Jason,
Here are some features that I have discussed with Warren in the in the past:
1) Vector graphics output (preferably in Adobe Illustrator format, SVG,
postscript, or PDF format). I tend to make all of my posters and publication
figures in Adobe illustrator (due to its scalability) and im
PyMOLers,
We need to move forward on PyMOL development, so I'm collecting ideas
from all our users on what they most want in future versions of PyMOL.
We already have a page on the PyMOL wiki for this
(http://pymolwiki.org/index.php/Ideas) from 2008/2009. We can discuss
the ideas here and on the
Hi All:
I am unable to view 3D Stereo. The system info and error message are
listed below. Pls. help. THX Deepa
1. OS: Windows 7
2. Monitor:Samsung Syncmaster 2233RZ 22in 3D Gaming LCD
3. Card: EVGA GeForce 9800 GTX+ 512MB PCIe w/Dual Link DVI
4. Glasses: NVIDIA 3D Vision Glasses
Pymol message
Matthias Haffke said:
> Is there a way to "extract" the translation / rotation matrix out of the
> super command or can I use another command to align both,
> protein B and A and to apply the function on every symmetry mate?
In addition the commands mentioned by Jason, you can look at matrix_co
Matthias,
fetch 1cll 1ggz, async=0
print cmd.get_object_matrix("1cll")
print cmd.get_object_matrix("1ggz")
super 1cll, 1ggz
print cmd.get_object_matrix("1cll")
print cmd.get_object_matrix("1ggz")
As you can see when an object is loaded it's transformation matrix is
the identity. Then, when yo
