[PyMOL] get coordinates

2010-07-20 Thread Bradley Hintze
Hi all, Is there an easy way to get coordinates of a given atom? e.g. 'get_coordinates /model//A/ALA`76/CA' for the CA coordinates of resi 76 All the examples on the wiki use iterate to get the coordinates of a selection. Is there a simple way to get one coordinate of a given atom? -- Bradley

Re: [PyMOL] get coordinates

2010-07-20 Thread Jason Vertrees
Hi Bradley, print cmd.get_atom_coords(76/CA) Cheers, -- Jason On Tue, Jul 20, 2010 at 5:39 PM, Bradley Hintze bradle...@aggiemail.usu.edu wrote: Hi all, Is there an easy way to get coordinates of a given atom? e.g. 'get_coordinates /model//A/ALA`76/CA' for the CA coordinates of resi 76

[PyMOL] Fwd: Help setting apbs tools2 on Mac

2010-07-20 Thread RaDaniel Christian 성준
I want to bring to your attention the wiki entry I posted in pymolwiki regarding the default loading paths for apbs: After installing with fink, none of the default paths work. http://pymolwiki.org/index.php/Talk:APBS#Making_the_default_paths_to_work.3F If someone knows what is going on, please

[PyMOL] Pymol and APBS

2010-07-20 Thread RaDaniel Christian 성준
Edited the subject. Thanks! On Tue, Jul 20, 2010 at 6:15 PM, RaDaniel Christian 성준 renderea...@gmail.com wrote: I want to bring to your attention the wiki entry I posted in pymolwiki regarding the default loading paths for apbs: After installing with fink, none of the default paths work.

Re: [PyMOL] get coordinates

2010-07-20 Thread Vitaly Vostrikov
Hi Bradley, If you have one of the latest builds, you can use this approach: http://www.mail-archive.com/pymol-users@lists.sourceforge.net/msg07754.html Hope it helps. Vitaly - Original Message - From: Bradley Hintze bradle...@aggiemail.usu.edu Date: Tuesday, July 20, 2010 5:37 pm

Re: [PyMOL] Label N-Glycosilation with Pymol

2010-07-20 Thread Jovine Luca
On Jul 19, 2010, at 12:29 PM, José Ignacio Sánchez Gallego wrote: Hi everybody, I have to make a 3D structure of my protein, I mutated some aminoacids in order to add some N-linked glycans, does anyone know is it possible to show the glycosilation on the surface of the 3D structure?? It

[PyMOL] 3rd Call For Papers, 17th Annual Tcl/Tk Conference 2010

2010-07-20 Thread Andreas Kupries
[[ Get your papers in. The deadline for abstracts and proposals is less than two weeks away. ]] 17th Annual Tcl/Tk Conference (Tcl'2010) http://www.tcl.tk/community/tcl2010/ October 11 - 15, 2010 Hilton Suites/Conference Center Chicago/Oakbrook Terrace, Illinois, USA Important