Dear pymol users,
I am looking for a way to zoom in a molecule, like the slab mode when
you are rolling the scroll wheel. The reason why rolling the scroll
wheel does not work in my case is that the resulting change is too
coarse grained, i.e. either I cannot see all the atoms I want to or
Dear pymol users,
pymol 1.4 on openSuSE with NVIDIA Quadro FX 3700/3800 and new NVIDIA drivers
(260.xxx and 270.xxx) does not recognize the OpenGL Version correctly. As a
result there is a kind of software OpenGL used.
The NVIDIA drivers provide OpenGL 3.3.0 but pymol 1.4 complains:
Joachim,
I'm running into the same issue on a SuSe SLED10 box. The 32bit binary
(on the 64bit OS) displays the same behavior, i.e. only the MESA libs
were used. The 64bit version actually core dumps during startup. I
opened up a bug report with Schrodinger and they were already working on
it (I
Nadine,
Probably the command line is your best friend here. Look into the 'clip
near,x' and 'clip far,x' command, which allows to move the front and
back clipping planes in x increments. Positive values move towards you,
negative values of x away from you.
If that does not provide enough fine
This appears to be a common problem with 1.4 and Jason is aware of it. The
same issue exists in Ubuntu 9.04 with Nvidia 180.xx drivers, 32 bit. The Win
version works OK.
Roger Rowlett
On Mar 29, 2011 7:53 AM, Schubert, Carsten [PRDUS] cschu...@its.jnj.com
wrote:
Joachim,
I'm running into the
Hi,
On Tue, 29 Mar 2011 6:12 AM Nadine Utz [mailto:nad...@mmb.pcb.ub.es]
wrote:
Dear pymol users,
I am looking for a way to zoom in a molecule, like the slab mode when
you are rolling the scroll wheel. The reason why rolling the scroll
wheel does not work in my case is that the
Hi,
I'm having some trouble accessing a function defined at top level with
alter_state in a python script launching pymol. Maybe I shouldn't be
wanting to do this, but what I'm trying, and failing to do is
exemplified by this script:
###
#!/usr/bin/env python
import pymol
if __name__ ==
Hi Tsjerk,
use either the global pymol.stored variable or the alter_state 'space' argument.
--
#!/usr/bin/env python
if __name__ == __main__:
import __main__
__main__.pymol_argv = [ 'pymol', '-cq' ]
import pymol
pymol.finish_launching()
else:
import pymol
def identity(x,y,z):
Hi,
I'd like to label a couple of CA atoms in with their AA code, residue
number and b-factor. Since this gets a long label, I want to split it to
get two lines.
For example, if I have the CA atom of Asn124 with a b-factor of 36.2, I
want it to be labelled as follows:
Asn124
36.2
Hi Joachim,
Sorry for the delay. I'm spending the entire day on the floor of the
ACS meeting, showing off PyMOL.
pymol 1.4 on openSuSE with NVIDIA Quadro FX 3700/3800 and new NVIDIA drivers
(260.xxx and 270.xxx) does not recognize the OpenGL Version correctly. As a
result there is a kind of
Hi Andreas,
This is currently not possible. If this is a feature you'd like to
see implemented, please go here http://pymol.org/contact and leave us
a message. It'll be tracked internally so we don't drop the ball if
we decide to implement it.
Cheers,
-- Jason
On Tue, Mar 29, 2011 at 12:03
Hi Andreas,
In the meantime, you can set double labels by using a pseudoatom,
labeling it with the second part, and placing the label at the spot
desired.
Cheers,
Tsjerk
On Wed, Mar 30, 2011 at 3:59 AM, Jason Vertrees
jason.vertr...@schrodinger.com wrote:
Hi Andreas,
This is currently not
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