[PyMOL] Show Sticks - Turns Molecule Blue
Hi PyMOLers, I have tried installing both PyMOL 1.3 and PyMOL 1.4.1 on OpenSuse (old Pentium 4) and am finding that when I load a molecule and click Show -- Sticks that the entire molecular gets colored blue (originally the green default lines color). After trying to change the color (Color -- Elements), it doesn't alter the color at all. However, hiding the sticks representation takes me back to the hidden green default lines color. I'm not sure if this is because I'm using an old computer or if I'm missing something (i.e. libraries). Any suggestions would be greatly appreciated. Thanks Sean -- Why Cloud-Based Security and Archiving Make Sense Osterman Research conducted this study that outlines how and why cloud computing security and archiving is rapidly being adopted across the IT space for its ease of implementation, lower cost, and increased reliability. Learn more. http://www.accelacomm.com/jaw/sfnl/114/51425301/___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
Re: [PyMOL] Show Sticks - Turns Molecule Blue
Hi Sean, This problem was fixed after the official v1.4.1 release. So, you will have to compile a newer version from SVN or download a precompiled Incentive version if you have access. If you can't do any of those, then try upgrading your video drivers--that worked for a fraction of our audience as well. This was known to happen on some Intel video cards. Cheers, -- Jason On Fri, Sep 9, 2011 at 11:24 AM, Sean Law magic...@hotmail.com wrote: Hi PyMOLers, I have tried installing both PyMOL 1.3 and PyMOL 1.4.1 on OpenSuse (old Pentium 4) and am finding that when I load a molecule and click Show -- Sticks that the entire molecular gets colored blue (originally the green default lines color). After trying to change the color (Color -- Elements), it doesn't alter the color at all. However, hiding the sticks representation takes me back to the hidden green default lines color. I'm not sure if this is because I'm using an old computer or if I'm missing something (i.e. libraries). Any suggestions would be greatly appreciated. Thanks Sean -- Why Cloud-Based Security and Archiving Make Sense Osterman Research conducted this study that outlines how and why cloud computing security and archiving is rapidly being adopted across the IT space for its ease of implementation, lower cost, and increased reliability. Learn more. http://www.accelacomm.com/jaw/sfnl/114/51425301/ ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 -- Why Cloud-Based Security and Archiving Make Sense Osterman Research conducted this study that outlines how and why cloud computing security and archiving is rapidly being adopted across the IT space for its ease of implementation, lower cost, and increased reliability. Learn more. http://www.accelacomm.com/jaw/sfnl/114/51425301/ ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
[PyMOL] Select single bond
Hi all, I am looking for a command to select and color a single bond in my structure without coloring the corresponding atoms. Any ideas? Cheers, Arne -- Why Cloud-Based Security and Archiving Make Sense Osterman Research conducted this study that outlines how and why cloud computing security and archiving is rapidly being adopted across the IT space for its ease of implementation, lower cost, and increased reliability. Learn more. http://www.accelacomm.com/jaw/sfnl/114/51425301/ ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
Re: [PyMOL] Select single bond
Hi Arne, Just select the two atoms around the bond and do: set_bond line_color, marine, (sele) Use your own color if you don't like marine. If you're showing sticks, use stick_color instead of line_color. Cheers, -- Jason On Fri, Sep 9, 2011 at 5:44 PM, Arne Dieckmann adiec...@googlemail.com wrote: Hi all, I am looking for a command to select and color a single bond in my structure without coloring the corresponding atoms. Any ideas? Cheers, Arne -- Why Cloud-Based Security and Archiving Make Sense Osterman Research conducted this study that outlines how and why cloud computing security and archiving is rapidly being adopted across the IT space for its ease of implementation, lower cost, and increased reliability. Learn more. http://www.accelacomm.com/jaw/sfnl/114/51425301/ ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net -- Jason Vertrees, PhD PyMOL Product Manager Schrodinger, LLC (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 -- Malware Security Report: Protecting Your Business, Customers, and the Bottom Line. Protect your business and customers by understanding the threat from malware and how it can impact your online business. http://www.accelacomm.com/jaw/sfnl/114/51427462/ ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
