Hi Lina,
Could you be more specific about what you are trying to do. E.g. I have a
structure from the pdb and I would like to display the density.
If it is this option then you can automatically generate ccp4 type maps from
http://eds.bmc.uu.se/eds/ assuming the structure factors have been
Hi Alexander,
by default PyMOL recognized secondary structure as the minimum consensus
over all states. So if a residue is not recognized as helix or sheet in
_all_ states, it will be assigned as loop. You might be happy with this:
# type after loading the file
dss state=1
For detailed
Hi Thomas,
thank you very much for the answer, I'm beginning to understand the
actual problem now.
dss state=1
helps, but it changes the problem: I would like to see the secondary
structure that corresponds to the single snapshot. When I use dss
state=1, I just see the secondary structure of
Hi Thomas, Troels and Alvin,
I appreciate your instant and detail advices to my problem, I got
succeeded - scripting in [C] enabled activate pymol in [S]. As Troels
says, I agree it's not pymol issue indeed, and sorry for contaminating
some questions to here list.
What is done:
laptop$ ssh -l
Hi Alexander,
On Wed, 2011-10-26 12:53 EDT, Alexander Schulz
sch...@dwi.rwth-aachen.de wrote:
Hi Thomas,
thank you very much for the answer, I'm beginning to understand the
actual problem now.
dss state=1
helps, but it changes the problem: I would like to see the secondary
