Hi James,
As I've understood there are no posible ways to represent H-bonds in
proteins in explicit manner. So I'm looking for possible way to do it
via some plugin or another way.
PyMOL can find polar contacts and represent them as dashed lines. You
don't need any extra plugin.
Hi All,
I would like to have sterioscopic 3D support under linux. I know this can
be done with a nvidia Quadro card, as shown on your supported platform page:
http://pymol.org/support/platforms
I have found that the HD6800 series from AMD has support for sterioscopic
3D and Quad Buffered OpenGL.
Dear all! :)
I need to merge two chains in one pdb ( object) into one united chain. How
I could do it?
Thanks
James
2011/11/18 Joel Tyndall joel.tynd...@otago.ac.nz
James,
** **
Please post this to the bulletin board. You can try to click on the word
(residues usually default) at
Thomas, thank you for so detailed explanation.
This way works good but I'd like to ask you about possibe Hbonds in the
protein chain.
As I remember for protein physics courses the H atom is always donor for
only ONE H-bond ( and O or N atoms could be akceptors for 1 or 2 Hbonds)
But In my case
While the single acceptor H-bond is most common, bifurcated (or three-centred)
H-bods are
not uncommon in crystal structures, as described starting page 22 of GA
Jeffrey's book:
