[PyMOL] Saving setting in PyMol
Dear PyMol users! I wounder to know about possible way to save settings of the PyMol after LogOut from it. E.g I've defined some basic settings like fetch_host and fetch_patch for uploading of new pdb files as well as set new background colour. Also I've changed some advanced settings - e.g I defined to unchange atom order in the processed pdb by the below commands set retain_order,1 set pdb_retain_ids,1 After exiting from PyMol and starting of the new session I must to define this settings each time again. Is there any way to save this parameters for each new pymol session ? JAmes -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
Re: [PyMOL] Saving setting in PyMol
Hi James Check out the information about how to load custom settings and functions: http://www.pymolwiki.org/index.php/Pymolrc Hope this helps, Folmer 2012/8/16 James Starlight jmsstarli...@gmail.com: Dear PyMol users! I wounder to know about possible way to save settings of the PyMol after LogOut from it. E.g I've defined some basic settings like fetch_host and fetch_patch for uploading of new pdb files as well as set new background colour. Also I've changed some advanced settings - e.g I defined to unchange atom order in the processed pdb by the below commands set retain_order,1 set pdb_retain_ids,1 After exiting from PyMol and starting of the new session I must to define this settings each time again. Is there any way to save this parameters for each new pymol session ? JAmes -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net -- Folmer Fredslund -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/ ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
[PyMOL] mapping atom names between molecules
I too have encountered a similar problem and was hoping that somebody had a suggestion for this. I've tried using CEALIGN to attempt to align the molecules and then hoped that I could simply use some atom-atom pairwise distances to map one set of atoms onto another but CEALIGN doesn't seem to work for non-standard atom names? Any help would be greatly appreciated. Thanks! -- Live Security Virtual Conference Exclusive live event will cover all the ways today's security and threat landscape has changed and how IT managers can respond. Discussions will include endpoint security, mobile security and the latest in malware threats. http://www.accelacomm.com/jaw/sfrnl04242012/114/50122263/___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
