Hi James,
just calculate the coordinates and write them out in PDB format, quite
simple task. Try the attached script.
Cheers,
Thomas
James Starlight wrote, On 01/04/13 09:14:
Hi Mike,
Chimera can build such lattices by means of it's build structure
module. On other hand I want to build
Hi Soumya,
can you send me (off-list) the map file and pdb file?
Cheers,
Thomas
Soumya Lipsa Rath wrote, On 12/29/12 13:41:
Dear Users,
I am trying to calculate the electrostatic potential of my protein using
Delphi software. However, when I load it to pymol, I see the red colour
at the
Where do you get the x_shift and y_shift values? I ended up writing a program to
take bond lengths and directions relative to select coord systems to generate
periodic or
almost periodic things. Right now polyenes but extensible. Is there some
program that
does this easily? This allows me to
Hi Mike,
I simply measured x_shift and y_shift from a cyclohexane fragment. Use
the graphical Builder or the fragment command to load stuff from the
fragment library.
PyMOL fragment cyclohexane
Cheers,
Thomas
Mike Marchywka wrote, On 01/04/13 15:44:
Where do you get the x_shift and y_shift
well, my point was just that they seem to be orientation sensitive although I
didn't look at
entire script in any detail and that if you wanted to re-orient the fragment
you would have to
recalculate these. Nothing difficult but just easier if there was a script that
said something like
put
