Hi Yarrow, set_bond stick_transparency, 0.5, myObj
Cheers, -- Jason On Fri, Apr 26, 2013 at 11:03 AM, Yarrow Madrona <amadr...@uci.edu> wrote: > > Hi, > > I have previously been able to do a "fake" fade on surface transparency by > doing the following: > where "testout" is an object in pymol. > > mdo 449: set transparency, 1, testout > mdo 550: show surface, testout > mdo 551: set transparency, 0.7, testout > mdo 552: set transparency, 0.6, testout > mdo 553: set transparency, 0.5, testout > mdo 554: set transparency, 0.4, testout > mdo 555: set transparency, 0.3, testout > mdo 556: set transparency, 0.3, testout > mdo 557: set transparency, 0.1, testout > mdo 558: set transparency, 0, testout > > > The surface will slowly come to life between frames 449 and 558. However, > if I try doing this with > "set stick_transparency", nothing happens. I have tried to do this using > scenes, however the object simply disappears instead of fading. I would > love some help on this. I am interested in python scripting as well as I > know a little python but not sure how to implement it in pymol. Thanks! > > > ------------- > Yarrow Madrona > > Graduate Student > Molecular Biology and Biochemistry Dept. > University of California, Irvine > Natural Sciences I, Rm 2403 > Irvine, CA 92697 > > > > ------------------------------------------------------------------------------ > Try New Relic Now & We'll Send You this Cool Shirt > New Relic is the only SaaS-based application performance monitoring service > that delivers powerful full stack analytics. Optimize and monitor your > browser, app, & servers with just a few lines of code. Try New Relic > and get this awesome Nerd Life shirt! http://p.sf.net/sfu/newrelic_d2d_apr > _______________________________________________ > PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) > Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users > Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net -- Jason Vertrees, PhD Director of Core Modeling Products Schrödinger, Inc. (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 ------------------------------------------------------------------------------ Try New Relic Now & We'll Send You this Cool Shirt New Relic is the only SaaS-based application performance monitoring service that delivers powerful full stack analytics. Optimize and monitor your browser, app, & servers with just a few lines of code. Try New Relic and get this awesome Nerd Life shirt! http://p.sf.net/sfu/newrelic_d2d_apr _______________________________________________ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
