Hi pymolers.
I have this strange problem, that labels
are not showing, unless I use the ray command.
Anyone experience the same?
image1: http://snag.gy/fhk3J.jpg
image2: http://snag.gy/0143z.jpg
fetch 1lev, async=0
preset.publication(selection='all')
remove chain F
select substrat
Dear PyMol users!
I have a set of conformations extracted from the MD trajectory (on the
equal time-steps). After loading of all that pdb's into pymol (each
conformer= separate pdb file) I want to sort that structures based on the
RMSD relative to the reference conformer (e.g step0.pdb ) in the s
Hi Jianghai,
by default PyMOL does a distance based bonding (basically when the VDW
radii of two atoms overlap, they get connected). To prevent that, you
need two settings:
# before saving the correctly bonded but distorted structure
set pdb_conect_all
# before loading
set connect_mode, 1
http: