[PyMOL] Loading pdbs with a non-standard load function?

2013-10-15 Thread Christoffer Norn
Hi all, I've written a script to load pdbs with extra information. Now I would like this script to used instead of the standard load command when I double-click pdb files. How would I go about doing this? Thanks, Chris --

Re: [PyMOL] How to visualize coarse-grained pdb file with CONECT ?

2013-10-15 Thread Thomas Holder
Hi Tsjerk & Aiqun, very good find, puzzled me as well. There is a setting "pdb_unbond_cations" which seems to be implemented a bit buggy, I think it should only prevent distance-based connectivity of cations, and not interfere with explicit CONECT records. Cheers, Thomas On Oct 15, 2013, at

Re: [PyMOL] How to visualize coarse-grained pdb file with CONECT ?

2013-10-15 Thread Tsjerk Wassenaar
Hi Aiqun Huang, It puzzled me for a while. I found that renaming all 'K' atoms to 'C' the bonds are drawn correctly. That still puzzles me, but at least it offers a way to get the desired view. Are you actually running simulations with this model? And are you interested in converting the CG model