Re: [PyMOL] ERROR: CGOOptimizeScreenTexturesAndPolygons() glGenBuffers returns err=1282
Hi, Is there any chance you can send me your input file(s)? Also, please let me know what computer, video card, and architecture (32-bit/64-bit) you're running on. Cheers, -- Jason On Sat, Nov 23, 2013 at 2:47 PM, Павел Томашевский croov...@gmail.comwrote: Hello I run PyMol 1.6.0 on windows 7 and I get this error: ERROR: CGOOptimizeScreenTexturesAndPolygons() glGenBuffers returns err=1282 or ERROR: CGOOptimizeToVBONotIndexed() glGenBuffers returns err=1282 over and over again. Is there any way to get rid of that? That's really annoying. crooveck -- Shape the Mobile Experience: Free Subscription Software experts and developers: Be at the forefront of tech innovation. Intel(R) Software Adrenaline delivers strategic insight and game-changing conversations that shape the rapidly evolving mobile landscape. Sign up now. http://pubads.g.doubleclick.net/gampad/clk?id=63431311iu=/4140/ostg.clktrk ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net -- Jason Vertrees, PhD Director of Core Modeling Products Schrödinger, Inc. (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 -- Shape the Mobile Experience: Free Subscription Software experts and developers: Be at the forefront of tech innovation. Intel(R) Software Adrenaline delivers strategic insight and game-changing conversations that shape the rapidly evolving mobile landscape. Sign up now. http://pubads.g.doubleclick.net/gampad/clk?id=63431311iu=/4140/ostg.clktrk___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
Re: [PyMOL] ERROR: CGOOptimizeScreenTexturesAndPolygons() glGenBuffers returns err=1282
2013/11/24 Jason Vertrees jason.vertr...@schrodinger.com: Hi, Hi Jason Is there any chance you can send me your input file(s)? Also, please let me know what computer, video card, and architecture (32-bit/64-bit) you're running on. So basically this problem occurs every time I start pymol, even without loading any input files. My computer is Dell Latitude E6400, running Windows 7 64-bits, I have Nvidia Quadro NVS160M. I've installed newest drivers a few days ago, but the problem still exists. If it matters... I've obtained PyMol executables (already compiled) from http://www.lfd.uci.edu/~gohlke/pythonlibs/3msnvi49/pymol-1.6.0.0.win-amd64-py2.7.exe. Executable comes with integrated Python 2.7 distribution... Cheers, -- Jason Cheers Pawel On Sat, Nov 23, 2013 at 2:47 PM, Павел Томашевский croov...@gmail.com wrote: Hello I run PyMol 1.6.0 on windows 7 and I get this error: ERROR: CGOOptimizeScreenTexturesAndPolygons() glGenBuffers returns err=1282 or ERROR: CGOOptimizeToVBONotIndexed() glGenBuffers returns err=1282 over and over again. Is there any way to get rid of that? That's really annoying. crooveck -- Shape the Mobile Experience: Free Subscription Software experts and developers: Be at the forefront of tech innovation. Intel(R) Software Adrenaline delivers strategic insight and game-changing conversations that shape the rapidly evolving mobile landscape. Sign up now. http://pubads.g.doubleclick.net/gampad/clk?id=63431311iu=/4140/ostg.clktrk ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net -- Jason Vertrees, PhD Director of Core Modeling Products Schrödinger, Inc. (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 -- Shape the Mobile Experience: Free Subscription Software experts and developers: Be at the forefront of tech innovation. Intel(R) Software Adrenaline delivers strategic insight and game-changing conversations that shape the rapidly evolving mobile landscape. Sign up now. http://pubads.g.doubleclick.net/gampad/clk?id=63431311iu=/4140/ostg.clktrk ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
[PyMOL] CGO rotate vs quaternion
Hi all, Ok, so today I have to admit that I don't know what quaternions are but I probably will need to use them. I'm working on PyMOL and Sensable Phantom Omni haptic device integration using Virtual Reality Peripherial Network (VRPN). So far I have a nicely working plugin for PyMOL that can retreive X,Y,Z coordinates and vector of four quaternion values. My CGO pointer (cone) can smoothly move according to X,Y and Z changes. Now I need to do some rotations of the pointer. AFAIK 'rotate' function accepts only degree value of rotation around axis. My question is: is there any build in PyMOL function that accepts four quaternion values and do rotation (instead of degree for each axis)? If not: do you have any simple hint or math formulas for me :) to calculate angles for rotation of CGO out of four quaternion value? Cheers Pawel 'crooveck' Tomaszewski -- Shape the Mobile Experience: Free Subscription Software experts and developers: Be at the forefront of tech innovation. Intel(R) Software Adrenaline delivers strategic insight and game-changing conversations that shape the rapidly evolving mobile landscape. Sign up now. http://pubads.g.doubleclick.net/gampad/clk?id=63431311iu=/4140/ostg.clktrk ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
Re: [PyMOL] ERROR: CGOOptimizeScreenTexturesAndPolygons() glGenBuffers returns err=1282
Hi Pawel, I suggest making sure that your video drivers are up to date at all times when using software like PyMOL. Mobile video cards notoriously badly implement the OpenGL spec. If that's a bug in our part, we'll try to track it down. Cheers, -- Jason On Sun, Nov 24, 2013 at 3:42 PM, Павел Томашевский croov...@gmail.comwrote: 2013/11/24 Jason Vertrees jason.vertr...@schrodinger.com: Hi, Hi Jason Is there any chance you can send me your input file(s)? Also, please let me know what computer, video card, and architecture (32-bit/64-bit) you're running on. So basically this problem occurs every time I start pymol, even without loading any input files. My computer is Dell Latitude E6400, running Windows 7 64-bits, I have Nvidia Quadro NVS160M. I've installed newest drivers a few days ago, but the problem still exists. If it matters... I've obtained PyMol executables (already compiled) from http://www.lfd.uci.edu/~gohlke/pythonlibs/3msnvi49/pymol-1.6.0.0.win-amd64-py2.7.exe . Executable comes with integrated Python 2.7 distribution... Cheers, -- Jason Cheers Pawel On Sat, Nov 23, 2013 at 2:47 PM, Павел Томашевский croov...@gmail.com wrote: Hello I run PyMol 1.6.0 on windows 7 and I get this error: ERROR: CGOOptimizeScreenTexturesAndPolygons() glGenBuffers returns err=1282 or ERROR: CGOOptimizeToVBONotIndexed() glGenBuffers returns err=1282 over and over again. Is there any way to get rid of that? That's really annoying. crooveck -- Shape the Mobile Experience: Free Subscription Software experts and developers: Be at the forefront of tech innovation. Intel(R) Software Adrenaline delivers strategic insight and game-changing conversations that shape the rapidly evolving mobile landscape. Sign up now. http://pubads.g.doubleclick.net/gampad/clk?id=63431311iu=/4140/ostg.clktrk ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net -- Jason Vertrees, PhD Director of Core Modeling Products Schrödinger, Inc. (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 -- Jason Vertrees, PhD Director of Core Modeling Products Schrödinger, Inc. (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 -- Shape the Mobile Experience: Free Subscription Software experts and developers: Be at the forefront of tech innovation. Intel(R) Software Adrenaline delivers strategic insight and game-changing conversations that shape the rapidly evolving mobile landscape. Sign up now. http://pubads.g.doubleclick.net/gampad/clk?id=63431311iu=/4140/ostg.clktrk___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
Re: [PyMOL] ERROR: CGOOptimizeScreenTexturesAndPolygons() glGenBuffers returns err=1282
Jason, My drivers are newest Nvidia 331.82 from http://www.nvidia.pl/download/driverResults.aspx/70559. I'm not sure if the problem is on my site or no. Maybe my pymol distribution is badly built? What else can I do to get rid of that bug? Cheers, Pawel 2013/11/24 Jason Vertrees jason.vertr...@schrodinger.com: Hi Pawel, I suggest making sure that your video drivers are up to date at all times when using software like PyMOL. Mobile video cards notoriously badly implement the OpenGL spec. If that's a bug in our part, we'll try to track it down. Cheers, -- Jason On Sun, Nov 24, 2013 at 3:42 PM, Павел Томашевский croov...@gmail.com wrote: 2013/11/24 Jason Vertrees jason.vertr...@schrodinger.com: Hi, Hi Jason Is there any chance you can send me your input file(s)? Also, please let me know what computer, video card, and architecture (32-bit/64-bit) you're running on. So basically this problem occurs every time I start pymol, even without loading any input files. My computer is Dell Latitude E6400, running Windows 7 64-bits, I have Nvidia Quadro NVS160M. I've installed newest drivers a few days ago, but the problem still exists. If it matters... I've obtained PyMol executables (already compiled) from http://www.lfd.uci.edu/~gohlke/pythonlibs/3msnvi49/pymol-1.6.0.0.win-amd64-py2.7.exe. Executable comes with integrated Python 2.7 distribution... Cheers, -- Jason Cheers Pawel On Sat, Nov 23, 2013 at 2:47 PM, Павел Томашевский croov...@gmail.com wrote: Hello I run PyMol 1.6.0 on windows 7 and I get this error: ERROR: CGOOptimizeScreenTexturesAndPolygons() glGenBuffers returns err=1282 or ERROR: CGOOptimizeToVBONotIndexed() glGenBuffers returns err=1282 over and over again. Is there any way to get rid of that? That's really annoying. crooveck -- Shape the Mobile Experience: Free Subscription Software experts and developers: Be at the forefront of tech innovation. Intel(R) Software Adrenaline delivers strategic insight and game-changing conversations that shape the rapidly evolving mobile landscape. Sign up now. http://pubads.g.doubleclick.net/gampad/clk?id=63431311iu=/4140/ostg.clktrk ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net -- Jason Vertrees, PhD Director of Core Modeling Products Schrödinger, Inc. (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 -- Jason Vertrees, PhD Director of Core Modeling Products Schrödinger, Inc. (e) jason.vertr...@schrodinger.com (o) +1 (603) 374-7120 -- Shape the Mobile Experience: Free Subscription Software experts and developers: Be at the forefront of tech innovation. Intel(R) Software Adrenaline delivers strategic insight and game-changing conversations that shape the rapidly evolving mobile landscape. Sign up now. http://pubads.g.doubleclick.net/gampad/clk?id=63431311iu=/4140/ostg.clktrk ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
Re: [PyMOL] CGO rotate vs quaternion
Hi Pawel, Have a look here: http://euclideanspace.com/maths/algebra/realNormedAlgebra/quaternions/index.htm It should provide some insight into what quaternions are and how you can use them to rotate or obtain an axis-angle representation. Cheers, Tsjerk On Sun, Nov 24, 2013 at 11:31 PM, Павел Томашевский croov...@gmail.comwrote: Hi all, Ok, so today I have to admit that I don't know what quaternions are but I probably will need to use them. I'm working on PyMOL and Sensable Phantom Omni haptic device integration using Virtual Reality Peripherial Network (VRPN). So far I have a nicely working plugin for PyMOL that can retreive X,Y,Z coordinates and vector of four quaternion values. My CGO pointer (cone) can smoothly move according to X,Y and Z changes. Now I need to do some rotations of the pointer. AFAIK 'rotate' function accepts only degree value of rotation around axis. My question is: is there any build in PyMOL function that accepts four quaternion values and do rotation (instead of degree for each axis)? If not: do you have any simple hint or math formulas for me :) to calculate angles for rotation of CGO out of four quaternion value? Cheers Pawel 'crooveck' Tomaszewski -- Shape the Mobile Experience: Free Subscription Software experts and developers: Be at the forefront of tech innovation. Intel(R) Software Adrenaline delivers strategic insight and game-changing conversations that shape the rapidly evolving mobile landscape. Sign up now. http://pubads.g.doubleclick.net/gampad/clk?id=63431311iu=/4140/ostg.clktrk ___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net -- Tsjerk A. Wassenaar, Ph.D. -- Shape the Mobile Experience: Free Subscription Software experts and developers: Be at the forefront of tech innovation. Intel(R) Software Adrenaline delivers strategic insight and game-changing conversations that shape the rapidly evolving mobile landscape. Sign up now. http://pubads.g.doubleclick.net/gampad/clk?id=63431311iu=/4140/ostg.clktrk___ PyMOL-users mailing list (PyMOL-users@lists.sourceforge.net) Info Page: https://lists.sourceforge.net/lists/listinfo/pymol-users Archives: http://www.mail-archive.com/pymol-users@lists.sourceforge.net
