Dear PyMol users!
I've forced with the problem of the installation of AutoDock plugin
pymoawiki.org/index.php/Autodock_plugin in recent pymol version. I've
tried to install it manually from the downloaded py script but at the
starting of pymol below error has bbeen appeared
Unable to initialize
Hi James,
is it recent version of PyMOL, or recent version of Windows which makes
trouble? On Windows, the plugin tries to write to the PyMOL installation
folder, which fails if you don't have write permissions there. This needs to be
fixed, the plugin should write to the users folder also on
Thomas,
Thanks for suggestions.
1)I have installed Numpy.
2) File /usr/lib/python2.7/dist-packages/pymol/parser.py, line 260, in
parse
exec(layer.com2+\n,self.pymol_names,self.pymol_names)
File string, line 1, in module
File /usr/share/pyshared/pmg_tk/startup/autodock_plugin.py, line
Is it possible to capture the output stream from PyMOL when it is launched
from a Python script with...
import os, __main__
os.environ['PYMOL_PATH'] = C:\Python27\PyMOL
__main__.pymol_argv=[pymol, -qx]
import pymol
pymol.finish_launching()
I see that an IDE can do this. Is there a way for me
Hi James - If I understand you correctly, you just need to give a selection
argument to the save command.
save ligand1.pdb, sele1
save ligand2.pdb, sele2
etc...
See http://pymolwiki.org/index.php/Save for more info.
Cheers,
Jared
--
Jared Sampson
Xiangpeng Kong Lab
NYU Langone Medical Center
Hi Jared,
The issue is that the all ligands are copied in one sele (and than
extracted to one object). Consequently I'd like to split it to separate
objects as the lig1.pdb lig2.pdb etc
James
2013/12/7 Sampson, Jared jared.samp...@nyumc.org
Hi James - If I understand you correctly, you
